Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA3409 | PA3900 | PA3409 | PA3900 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.929 |
| PA3409 | hasAp | PA3409 | PA3407 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.611 |
| PA3409 | hasD | PA3409 | PA3406 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Transport protein HasD; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.677 |
| PA3409 | hasR | PA3409 | PA3408 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme uptake outer membrane receptor HasR precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.902 |
| PA3409 | hemO | PA3409 | PA0672 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme oxygenase; Involved in heme degradation. Catalyzes the degradation of heme to biliverdin, with the release of iron. Forms biliverdin delta (70%) and beta (30%). | 0.438 |
| PA3409 | pvdS | PA3409 | PA2426 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sigma factor PvdS; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the sigma-70 factor family. ECF subfamily. | 0.821 |
| PA3900 | PA3409 | PA3900 | PA3409 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.929 |
| PA3900 | hasR | PA3900 | PA3408 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme uptake outer membrane receptor HasR precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.686 |
| PA3900 | hemO | PA3900 | PA0672 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme oxygenase; Involved in heme degradation. Catalyzes the degradation of heme to biliverdin, with the release of iron. Forms biliverdin delta (70%) and beta (30%). | 0.610 |
| PA3900 | pvdS | PA3900 | PA2426 | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sigma factor PvdS; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the sigma-70 factor family. ECF subfamily. | 0.832 |
| exbD1 | hasR | PA0199 | PA3408 | Transport protein ExbD; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. | Heme uptake outer membrane receptor HasR precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.796 |
| exbD1 | pfeA | PA0199 | PA2688 | Transport protein ExbD; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. | Ferric enterobactin receptor, outer membrane protein PfeA precursor; Specific receptor for the siderophore ferric enterobactin. | 0.501 |
| exbD1 | tonB1 | PA0199 | PA5531 | Transport protein ExbD; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. | TonB1; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). | 0.978 |
| hasAp | PA3409 | PA3407 | PA3409 | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.611 |
| hasAp | hasD | PA3407 | PA3406 | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Transport protein HasD; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.943 |
| hasAp | hasR | PA3407 | PA3408 | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Heme uptake outer membrane receptor HasR precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.977 |
| hasAp | hemO | PA3407 | PA0672 | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Heme oxygenase; Involved in heme degradation. Catalyzes the degradation of heme to biliverdin, with the release of iron. Forms biliverdin delta (70%) and beta (30%). | 0.591 |
| hasD | PA3409 | PA3406 | PA3409 | Transport protein HasD; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable transmembrane sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.677 |
| hasD | hasAp | PA3406 | PA3407 | Transport protein HasD; Product name confidence: Class 2 (High similarity to functionally studied protein). | Heme acquisition protein HasAp; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.943 |
| hasD | hasR | PA3406 | PA3408 | Transport protein HasD; Product name confidence: Class 2 (High similarity to functionally studied protein). | Heme uptake outer membrane receptor HasR precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.961 |
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